{
  "_id": "6a1014d5acfb0bcc41c83cb3",
  "Package": "EpiSignalDetection",
  "Type": "Package",
  "Title": "Signal Detection Analysis",
  "Version": "0.1.1",
  "Date": "2018-10-29",
  "Authors@R": "c( \nperson( given = \"Lore\", family = \"Merdrignac\",\nrole = c(\"aut\", \"ctr\"), email = \"l.merdrignac@epiconcept.fr\", comment = \"Author of the package and original code\"),\nperson( given = \"Joana\", family = \"Gomes Dias\",\nrole = c(\"aut\", \"fnd\", \"cre\"), email = \"joana.gomes.dias@ecdc.europa.eu\", comment = \"Project manager and package maintainer\"),\nperson( given = \"Esther\", family = \"Kissling\",\nrole = c(\"aut\", \"ctr\"), email = \"e.kissling@epiconcept.fr\"),\nperson( given = \"Tommi\", family = \"Karki\",\nrole = c(\"aut\", \"fnd\"), email = \"tommi.karki@ecdc.europa.eu\"),\nperson( given = \"Margot\", family = \"Einoder-Moreno\",\nrole = c(\"ctb\", \"fnd\"), email = \"margot.einoder-moreno@ecdc.europa.eu\"))",
  "Description": "Exploring time series for signal detection. It is\nspecifically designed to detect possible outbreaks using\ninfectious disease surveillance data at the European Union /\nEuropean Economic Area or country level. Automatic detection\ntools used are presented in the paper \"Monitoring count time\nseries in R: aberration detection in public health\nsurveillance\", by Salmon et al. (2016)\n<doi:10.18637/jss.v070.i10>. The package includes: - Signal\nDetection tool, an interactive 'shiny' application in which the\nuser can import external data and perform basic signal\ndetection analyses; - An automated report in HTML format,\npresenting the results of the time series analysis in tables\nand graphs. This report can also be stratified by population\ncharacteristics (see 'Population' variable). This project was\nfunded by the European Centre for Disease Prevention and\nControl.",
  "License": "EUPL",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "6.1.0",
  "VignetteBuilder": "knitr",
  "URL": "http://atlas.ecdc.europa.eu/public/index.aspx",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev zlib1g-dev",
  "Repository": "https://eu-ecdc.r-universe.dev",
  "Date/Publication": "2025-07-18 07:09:26 UTC",
  "RemoteUrl": "https://github.com/eu-ecdc/episignaldetection",
  "RemoteRef": "HEAD",
  "RemoteSha": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 05:35:35 UTC",
    "User": "root"
  },
  "Author": "Lore Merdrignac [aut, ctr] (Author of the package and original code),\nJoana Gomes Dias [aut, fnd, cre] (Project manager and package\nmaintainer),\nEsther Kissling [aut, ctr],\nTommi Karki [aut, fnd],\nMargot Einoder-Moreno [ctb, fnd]",
  "Maintainer": "Joana Gomes Dias <joana.gomes.dias@ecdc.europa.eu>",
  "MD5sum": "36a29364abcd45b8fdba3a8e29c7aa72",
  "_user": "eu-ecdc",
  "_type": "src",
  "_file": "EpiSignalDetection_0.1.1.tar.gz",
  "_fileid": "e0829a66d8d54428776017d7c079ab73a9a79250024ec46774e99501896301f3",
  "_filesize": 1094088,
  "_sha256": "e0829a66d8d54428776017d7c079ab73a9a79250024ec46774e99501896301f3",
  "_created": "2026-05-15T05:35:35.000Z",
  "_published": "2026-05-22T08:33:25.860Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77344460213,
      "time": 128,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7010797903"
    },
    {
      "job": 77344459750,
      "time": 115,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7010795169"
    },
    {
      "job": 77344459506,
      "time": 104,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7011040039"
    },
    {
      "job": 77344459880,
      "time": 115,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7011053990"
    },
    {
      "job": 77344459308,
      "time": 200,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7010773984"
    },
    {
      "job": 77344459188,
      "time": 110,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156237278"
    },
    {
      "job": 77344459702,
      "time": 81,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7010788810"
    },
    {
      "job": 77344460267,
      "time": 77,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7010787921"
    },
    {
      "job": 77344459752,
      "time": 82,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7010789130"
    }
  ],
  "_buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/eu-ecdc/episignaldetection",
  "_commit": {
    "id": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
    "author": "Caspar Ruhe <Caspar.Ruhe@ecdc.europa.eu>",
    "committer": "Caspar Ruhe <Caspar.Ruhe@ecdc.europa.eu>",
    "message": "Updated EUPL 1.2 license.\n",
    "time": 1752822566
  },
  "_maintainer": {
    "name": "Joana Gomes Dias",
    "email": "joana.gomes.dias@ecdc.europa.eu",
    "login": "joanagomesdias",
    "uuid": 12893816
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "pander",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Imports"
    },
    {
      "package": "surveillance",
      "role": "Imports"
    },
    {
      "package": "ISOweek",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "version": ">= 1.20",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Imports"
    }
  ],
  "_owner": "eu-ecdc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-29",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 19,
  "_contributors": [
    {
      "user": "loremerdrignac",
      "count": 53,
      "uuid": 37700893
    },
    {
      "user": "joanagomesdias",
      "count": 2,
      "uuid": 12893816
    },
    {
      "user": "casparecdc",
      "count": 1,
      "uuid": 99500194
    },
    {
      "user": "ecdcadmin",
      "count": 1,
      "uuid": 42175424
    }
  ],
  "_userbio": {
    "uuid": 42175592,
    "type": "organization",
    "name": "European Centre for Disease Prevention and Control (ECDC)",
    "description": "ECDC is an agency of the European Union aimed at strengthening Europe's defenses against infectious diseases."
  },
  "_downloads": {
    "count": 296,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EpiSignalDetection"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/eu-ecdc/episignaldetection",
  "_searchresults": 18,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/EpiSignalDetection.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/eu-ecdc/episignaldetection",
  "_realowner": "eu-ecdc",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2018-11-14"
    },
    {
      "version": "0.1.1",
      "date": "2018-11-15"
    },
    {
      "version": "0.1.2",
      "date": "2021-11-30"
    },
    {
      "version": "0.1.3",
      "date": "2026-03-03"
    }
  ],
  "_exports": [
    "aggAtlasExport",
    "algoSD",
    "cleanAtlasExport",
    "filterAtlasExport",
    "importAtlasExport",
    "plotSD",
    "runEpiSDApp",
    "runEpiSDReport",
    "stsSD",
    "studyPeriod"
  ],
  "_datasets": [
    {
      "name": "AlgoParam",
      "title": "List of datasets containing the Farrington Flexible and GLRNB default parameters by time unit",
      "object": "AlgoParam",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "SignalData",
      "title": "Dataset for Signal Detection Analysis, reported cases, 1999-2018 (ECDC Atlas export)",
      "object": "SignalData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "HealthTopic",
        "Population",
        "Indicator",
        "Time",
        "RegionName",
        "NumValue",
        "TimeUnit",
        "TimeYear",
        "TimeMonth",
        "TimeWeek",
        "TimeDate"
      ],
      "rows": 80834,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "aggAtlasExport",
      "title": "Aggregate filtered final Atlas export",
      "topics": [
        "aggAtlasExport"
      ]
    },
    {
      "page": "AlgoParam",
      "title": "List of datasets containing the Farrington Flexible and GLRNB default parameters by time unit",
      "topics": [
        "AlgoParam"
      ]
    },
    {
      "page": "algoSD",
      "title": "Build algo object",
      "topics": [
        "algoSD"
      ]
    },
    {
      "page": "cleanAtlasExport",
      "title": "Clean the Atlas export dataframe",
      "topics": [
        "cleanAtlasExport"
      ]
    },
    {
      "page": "filterAtlasExport",
      "title": "Filter clean Atlas export",
      "topics": [
        "filterAtlasExport"
      ]
    },
    {
      "page": "importAtlasExport",
      "title": "Import ECDC Atlas export file (csv)",
      "topics": [
        "importAtlasExport"
      ]
    },
    {
      "page": "plotSD",
      "title": "Plot the Signal Detection time series",
      "topics": [
        "plotSD"
      ]
    },
    {
      "page": "runEpiSDApp",
      "title": "Run the EpiSignalDectection 'shiny' application",
      "topics": [
        "runEpiSDApp"
      ]
    },
    {
      "page": "runEpiSDReport",
      "title": "Run the EpiSignalDetection report (HTML markdown)",
      "topics": [
        "runEpiSDReport"
      ]
    },
    {
      "page": "SignalData",
      "title": "Dataset for Signal Detection Analysis, reported cases, 1999-2018 (ECDC Atlas export)",
      "topics": [
        "SignalData"
      ]
    },
    {
      "page": "stsSD",
      "title": "Build sts object",
      "topics": [
        "stsSD"
      ]
    },
    {
      "page": "studyPeriod",
      "title": "Compute the study period",
      "topics": [
        "studyPeriod"
      ]
    }
  ],
  "_readme": "https://github.com/eu-ecdc/episignaldetection/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "cpp11",
    "crosstalk",
    "deldir",
    "digest",
    "dplyr",
    "DT",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "isoband",
    "ISOweek",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "nlme",
    "otel",
    "pander",
    "pillar",
    "pkgconfig",
    "polyclip",
    "polyCub",
    "promises",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "S7",
    "sass",
    "scales",
    "shiny",
    "sourcetools",
    "sp",
    "spatstat.data",
    "spatstat.geom",
    "spatstat.univar",
    "spatstat.utils",
    "stringi",
    "stringr",
    "surveillance",
    "tibble",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml"
  ],
  "_score": 4.710117365111817,
  "_indexed": true,
  "_nocasepkg": "episignaldetection",
  "_universes": [
    "eu-ecdc",
    "joanagomesdias"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-15T05:37:47.000Z",
      "distro": "noble",
      "commit": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
      "fileid": "030182ee0cc942877bc9209b9d2380085fc66ae06afd186a92655e3851cca467",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-15T05:37:34.000Z",
      "distro": "noble",
      "commit": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
      "fileid": "650f8a3fb8cc53e192a5d2900c82821ed390df038c276d0a29dfe393133ded1e",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-15T05:58:43.000Z",
      "commit": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
      "fileid": "3679e4fd32f3f329709683d3328dbbb8c3a8b14cec27685c033666362ee84c27",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-05-15T05:59:51.000Z",
      "commit": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
      "fileid": "e3ea5f8289ec1a04c8495d1f5c620fbdfd22232ef4d9c745b205658a11f96c69",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-15T05:36:55.000Z",
      "commit": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
      "fileid": "1b168a873c7dcfe52d82ae89cabb15dfdaa36cb9466107d0e56cc334566189a2",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-15T05:36:51.000Z",
      "commit": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
      "fileid": "05e822498846d253fc162e95c5b104e3b50dabb3ad31609f2a194855daa9650a",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-05-15T05:36:52.000Z",
      "commit": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
      "fileid": "5ee29fabb2f12b165caa0a571f3112374043aec87bf7eb788e71403ac2547f3f",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-05-22T08:33:07.000Z",
      "commit": "f2642d4b9b0404d312ba8eb6a8d2d0baf5798f65",
      "fileid": "a37a93f320707b3e5d877e563b5345369bf8b3eeb9cfa151fd5d83f1117618c2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/eu-ecdc/actions/runs/25846893790"
    }
  ]
}